1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaaaactgcaacttctcttttgattcgacacttacttgttctctgtctccctgtctcatactactttctatcccttttcaatctcactattttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGACCAAATAAACAGAGTCAAAAATGAAGATGGTAACTGCTTTCACCGGCAA
species | Glycine max |
transcript | GLYMA19G22420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTTCGCGCTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|192333795|gb|FK025840.1|FK025840
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|21993989|gb|BQ785517.1|BQ785517
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|192316668|gb|FK008261.1|FK008261
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|151411877|gb|EV281688.1|EV281688
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATTCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|192316667|gb|FK008260.1|FK008260
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGAEST: gi|192309334|gb|FK000542.1|FK000542
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
EST: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGA TTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
genomic: TCCTCTTCGCACTTAGCATAGTCGCATAGTTCTGAAATTCGACGCTCAGAgtaagttatt ... ttttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGA
gtctccctgtctcatactactttctatcccttttcaatctcactattttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGACCAAATAAACAGAGTCAAAAATGAAGATGGTAACTGCTTTCACCGGCAA
atctcac putative branch site (score: 3)
ctatttt CT-rich tract
actattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaactgcaacttctcttttgattcgacacttacttgttctctgtctccctgtctcatactactttctatcccttttcaatctcactattttatacagTTGGTGAATCCAGAGGTGAAAGTTTATTTTTTGAATTGTGAGGTAGATTGACCAAATAAACAGAGTCAAAAATGAAGATGGTAACTGCTTTCACCGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - ctgcaac
- - - - - - - - - - - - - - -cacttac