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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctttttaattttctattcccattaccgatttttttttaatatatatatatgtgttttttttaatgggtgtgtgtgtcagagtctgtttcctatgattctgtttctgggtctttagattacattaaattagatcagaattgaatcgaagtgtttggggtggtgcagAATTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGGTGATAAAGGTGCCAATAATGGGGATACCTGGTGTTGATAGAGAATTGAA

Basic information

species Glycine max
transcript GLYMA19G06470.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209696543|gb|BW655696.1|BW655696
EST:     TTTGAATGGTTGGTAGTTATTTGAATAAAAACTAGTACAAGTGNNNNNNN                         NNTTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGG
genomic: TTTGAATGGTTGGTAGTTATTTGAATAAAAACTAGTACAAGTGAAAAAAAgtaatctttt ... ggtggtgcagAATTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGG
EST: gi|213595389|gb|DB966527.1|DB966527
EST:     TTTGAATGGTTGGTAGTTATTTGAATAAAAACTAGTACAAGTGNNNNNNN                         NNTTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGG
genomic: TTTGAATGGTTGGTAGTTATTTGAATAAAAACTAGTACAAGTGAAAAAAAgtaatctttt ... ggtggtgcagAATTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagattacattaaattagatcagaattgaatcgaagtgtttggggtggtgcagAATTCAGAGCAGCATTTTGTGTCCAAAAGAAGAGGAGTAATAGGACAGAGGTGATAAAGGTGCCAATAATGGGGATACCTGGTGTTGATAGAGAATTGAA
     attacattaaattaga  TA-rich tract