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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatctcagtttgctgattcactgctttatgtgcttgtgcttgccctcacaacataaagtttatgttatttattctcaaaatattgttaaatggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC

Basic information

species Glycine max
transcript GLYMA19G06090.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394955|gb|EV264826.1|EV264826
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|213594750|gb|DB959833.1|DB959833
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|9259930|gb|BE348077.1|BE348077
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|209697844|gb|BW663961.1|BW663961
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|14206191|gb|BG839869.1|BG839869
EST:     CCACCGCNCAATCTTCNGTCGTTTCCGACGATGGCTTCTCCGTTTNTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCAC-TCTTGTC
EST: gi|51338338|gb|CO982204.1|CO982204
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|209722136|gb|BW659325.1|BW659325
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|209700887|gb|BW683104.1|BW683104
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|163923391|gb|EH039694.1|EH039694
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|213591872|gb|DB973423.1|DB973423
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|151398964|gb|EV268835.1|EV268835
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|6481869|gb|AW201140.1|AW201140
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTTTTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTT-GTC
EST: gi|15664219|gb|BI701590.1|BI701590
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|213610855|gb|DB963185.1|DB963185
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
EST: gi|8828022|gb|BE211752.1|BE211752
EST:     CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAG                         CTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
genomic: CCACCGCACAATCTTCCGTCGTTTCCGACGATGGCTTCTCCGTTTCTAAGgtcggtcttt ... atggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcacaacataaagtttatgttatttattctcaaaatattgttaaatggttgcagCTTTCATTTGGTGTGATTGGTCTAGGTGTTGGACTCTCACTCTTGTC
 ccctcac  putative branch site (score: 3)
        ataaagtttatgttat  TA-rich tract