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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgtgccaaaactgtccttacagttttttttttcaatctttgttattatgttgttctgatgttctactgttaattatctctaccccacattgaagatctgtgtgatttgcttgattctgtgttaacccttttgtttttttgtttttttttttttgcttgatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAAGCCCTGCTTATCTTAGATTGAGCCAGAAAACTGTCAATTCCCTTGGTGA

Basic information

species Glycine max
transcript GLYMA19G05980.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G05980.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0083g00110.t01 (Vitis vinifera), 3'ss of exon 1
gtacttgtgccaaaactgtccttacagttttttttttcaatctttgttattatgttgttctgatgttctactgttaattatctctaccccacattgaagatctgtgtgatttgcttgattctgtgttaacccttttgttt----ttttgtttttttttttttgcttgatct-tgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAAGCCCTGCTTATCTTAGATTGAGCCAGAAAACTGTCAATTCCCTTGGTGA
                                                                                             |     || |   |  |||  ||| ||  |  |||||  ||||||||    ||  | ||   || ||||    | ||| |||||| ||||| || |||||   |||||| ||||||||||||||||| ||||||||||| ||||| ||  |||||||||||||| ||||||||||||| || ||
--------------------------------------------------------------------------------------------gtgagtaatttccatcctttcattgcttaaggattaactattttgtttggtcttccgattgacttcttttttgggttctgtgcagCTAAAGTGCAGGAACTCCATGTGTACGAGATCAATGAGAGAGACCGTGGAAGCCCAGCTTACCTCCGATTGAGCCAGAAATCTGTCAATTCCCTCGGCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12689937|gb|BG156273.1|BG156273
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|151410385|gb|EV280200.1|EV280200
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|18734466|gb|BM528201.1|BM528201
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|192333207|gb|FK026088.1|FK026088
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|192329204|gb|FK021470.1|FK021470
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|13481793|gb|BG511136.1|BG511136
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGGGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|10232407|gb|BE801295.1|BE801295
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|16346567|gb|BI972162.1|BI972162
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|10847493|gb|BF070171.1|BF070171
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGA
EST: gi|9898588|gb|BE607556.1|BE607556
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|8284301|gb|BE021860.1|BE021860
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|8283848|gb|BE021407.1|BE021407
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|13481755|gb|BG511098.1|BG511098
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|21888251|gb|BQ741464.1|BQ741464
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|6071971|gb|AW101358.1|AW101358
EST:     CAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|17022803|gb|BM093837.1|BM093837
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|9902111|gb|BE611079.1|BE611079
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|26059082|gb|CA801996.1|CA801996
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|21637741|gb|BM107896.1|BM107896
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAA-CTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGA
EST: gi|213595286|gb|DB964019.1|DB964019
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
EST: gi|16347020|gb|BI972615.1|BI972615
EST:     CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAG                         CCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA
genomic: CAACAAGTCTTTCACTTGTAGAAGCCAGGCTGAACCATCTTCTGACTCAGgtacttgtgc ... gatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgtgttaacccttttgtttttttgtttttttttttttgcttgatcttgcagCCAAAGTCCAAGAACTGAGTGTGTATGAGATCAATGAGAGAGATCGTGGAAGCCCTGCTTATCTTAGATTGAGCCAGAAAACTGTCAATTCCCTTGGTGA
            cccttttgtttttttg  CT-rich tract
               ttttgtttttttgttt  TA-rich tract