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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtttgcattttcagcattatgtgatgcttgtgtggttttggttttaaagcttttttttttttttggtgtgtgtgtgtggttttgtttttccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG

Basic information

species Glycine max
transcript GLYMA19G05890.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310204|gb|FK002588.1|FK002588
EST:     TCAGAGGAGGCCCCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
genomic: TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
EST: gi|58021884|gb|CX708625.1|CX708625
EST:     TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
genomic: TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
EST: gi|151395321|gb|EV265192.1|EV265192
EST:     TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
genomic: TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
EST: gi|192322831|gb|FK014762.1|FK014762
EST:     TCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
genomic: TCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
EST: gi|15813319|gb|BI785594.1|BI785594
EST:     TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCNAT-GNGAAG
genomic: TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
EST: gi|192294601|gb|FG986450.1|FG986450
EST:     TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAAT                         GTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
genomic: TCAGAGGAGGCCTCGCTCTCGTCTCTGATAACAAAGATCTCATCTTTAATgtaactctct ... tccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagcttttttttttttttggtgtgtgtgtgtggttttgtttttccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG
                                    ttttgtttttcc  CT-rich tract
       ttttttttttttttgg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aggtttgcattttcagcattatgtgatgcttgtgtggttttggttttaaagcttttttttttttttggtgtgtgtgtgtggttttgtttttccgatgtagGTCCATCCAGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAG

- - -tgcattt
- - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg