1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaaggattttcccgttcctttcattctgaattttttgtacctttttaaagacctatggcaatctctcacaaatatgtcgtttttttatgctctctgtagTTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
species | Glycine max |
transcript | GLYMA19G04900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGG TTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAGEST: gi|213613495|gb|DB963239.1|DB963239
genomic: TACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGGgttagtaatt ... ctctctgtagTTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
EST: TACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGG TTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
genomic: TACGAGTTGTTCAGCGAACTCAGTATCCACCTCCGAGTTAACCTCATGGGgttagtaatt ... ctctctgtagTTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
ttaaagacctatggcaatctctcacaaatatgtcgtttttttatgctctctgtagTTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
ctctcac putative branch site (score: 3)
tttttttatgctctct putative PPT
tttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaggattttcccgttcctttcattctgaattttttgtacctttttaaagacctatggcaatctctcacaaatatgtcgtttttttatgctctctgtagTTATGACTATTCTGGATATGGGCAGTCGTCTGGAAAG
- - - - - -cccgttc
- - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - - - - -gtacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac