1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aataatagcatgacatgaatgataacttcagcaaacttcacatgtttgtcagtgttgttattattgttcttctttaatgctgttttggtgtaatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAGAGGGAGGGTACTGGTTTGTGGAGGCAGTGACACTTTTGCAAGCTTAGA
species | Glycine max |
transcript | GLYMA19G04340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATGACACCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAEST: gi|192330619|gb|FK022274.1|FK022274
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAEST: gi|151395300|gb|EV265171.1|EV265171
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGCGAACTGAAEST: gi|151408574|gb|EV278382.1|EV278382
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAEST: gi|209724099|gb|BW654526.1|BW654526
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAEST: gi|213590172|gb|DB963791.1|DB963791
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAEST: gi|213589356|gb|DB961689.1|DB961689
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
EST: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAG GTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
genomic: TATGACATCTAAAACATCTATCTACTCTCTACCCACTTTCTCAGTTCCAGgttcctctct ... taatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAA
ttgtcagtgttgttattattgttcttctttaatgctgttttggtgtaatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAGAGGGAGGGTACTGGTTTGTGGAGGCAGTGACACTTTTGCAAGCTTAGA
ctttaat putative branch site (score: 4)
ttattattgttcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataatagcatgacatgaatgataacttcagcaaacttcacatgtttgtcagtgttgttattattgttcttctttaatgctgttttggtgtaatttgcagGTCAGCAAGAGAAACAGTACTTATCCATATTACAGGGTTATGTGAACTGAAGAGGGAGGGTACTGGTTTGTGGAGGCAGTGACACTTTTGCAAGCTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -gcatgac
- - - - - - - -tgaatga
- - - - - - - - - - - - -cttcagc
- - - - - - - - - - - - - - - - - acttcac
- - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt