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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttttcttttttgttctttcatcctgcgcaatggtagtgttaaaaattgaaactttatgtttcaatttactttcccatcttttttctcacttacccatttatgtttttgggtcaaattttggggcagAGGAGAAAGTAGAGGGGAAGGTGGAAGAGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCAT

Basic information

species Glycine max
transcript GLYMA19G03430.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G03430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0108g01480.t01 (Vitis vinifera), 3'ss of exon 1
gttagtttttttcttttttgttctttcatcctgcgcaatggtagtgttaaaaattgaaacttta-tgtttcaatttactttcccatcttttttctcacttacccatttatgtttttgggtcaaattttggggcagAGGAGAAAGTAGAGGGGAAGGTGGAAGAGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCAT---------
|| ||||  |||  ||| | ||  ||      |   |  |||| ||  ||||    |  ||  | | | | ||||||  ||        ||||  | |  |   |       | ||   ||   | |||  ||||| ||   || |||  | ||||  |  |         || ||| |||||||||||||||||||||| ||||||||||||| ||  | ||||| ||||||||         
gtcagttcgtttgatttatttttctttgaa--gtaaatgggtaatgagaaaacccaattctgaaatatgtaaatttagatt-------attttgactccgaaagaggctgactcttatatc---tgttgttgcagAAGAAGGAGAAGAAAGAAAGGAAGGGG---------TGGTGAGGGAAGGAGTAGCATCAATAGCACTGTTGCCATGTGGGTCCCTTTCAGGCCACTTCATCCAACTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccatcttttttctcacttacccatttatgtttttgggtcaaattttggggcagAGGAGAAAGTAGAGGGGAAGGTGGAAGAGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCAT
               cacttac  putative branch site (score: 2)
                        atttatgttttt  TA-rich tract