1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcaaccgattgttgttaacagtacttttttccccccatgagttttattatatatgtgtcatgcaaagcatgcaatgcaactttggtttttctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAGGACAAGTGCCACACAGAGAGTGCCAAGAATCACGTACCTGCACATTTA
species | Glycine max |
transcript | GLYMA19G02430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTGACGAGTTGCAATCTGTTCTAG ATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAEST: gi|6913835|gb|AW395365.1|AW395365
genomic: CATTGACGAGTTGCAATCTGTTCTAGgtactttttt ... ctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCA
EST: AGGCTTTGTCCCTCCCCATGAGGACATTGACGAGTTGCAATCTGTTCTAG ATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAEST: gi|6481438|gb|AW200709.1|AW200709
genomic: AGGCTTTGTCCCTCCCCATGAGGACATTGACGAGTTGCAATCTGTTCTAGgtactttttt ... ctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCA
EST: GNCTTTGTCCCTTCCCCATGAGGACATTGACGAGTTGCAATCTGTTCTAG ATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCA
genomic: G-CTTTGTCCC-TCCCCATGAGGACATTGACGAGTTGCAATCTGTTCTAGgtactttttt ... ctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCA
attatatatgtgtcatgcaaagcatgcaatgcaactttggtttttctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAGGACAAGTGCCACACAGAGAGTGCCAAGAATCACGTACCTGCACATTTA
ctttggtttttcttt CT-rich tract
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaccgattgttgttaacagtacttttttccccccatgagttttattatatatgtgtcatgcaaagcatgcaatgcaactttggtttttctttgtgcagATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAGGACAAGTGCCACACAGAGAGTGCCAAGAATCACGTACCTGCACATTTA
- - - - -tgttgtt
- - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaact