Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatttgatattttattttttaaaaaaatgtttttttttttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTT

Basic information

species Glycine max
transcript GLYMA19G02380.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02380.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
--gttctttctctctctctctctctctctctctctatatat-atatatata-tatatatatatatatatatttgatattttattttttaaaaaaatgtttttttttttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTT
  |    | |   ||     |  || ||   ||||    || ||   |  | |       | |||     | || |  |||  || ||       || ||   |||||    | |||||| |||| |||||||||||| | |||||| ||||| ||| ||||||||||| |  ||| ||| || 
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgt--tggttcgcttttt--ccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322773|gb|FK014464.1|FK014464
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|192326216|gb|FK016993.1|FK016993
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACGGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|209716704|gb|BW682226.1|BW682226
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|163927139|gb|EH040104.1|EH040104
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTACAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|23728214|gb|BU762153.1|BU762153
EST:     CTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|9986941|gb|BE661049.1|BE661049
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|9439824|gb|BE440337.1|BE440337
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|7684900|gb|AW755548.1|AW755548
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ACCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|192312318|gb|FK005322.1|FK005322
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
EST: gi|298183175|gb|HO028438.1|HO028438
EST:     CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAG                         ATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT
genomic: CATGTCTAAGGGTCCTGGTCTCTACTCTGACATTGGCAAGAAAGCCAGAGgttctttctc ... ttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatatttgatattttattttttaaaaaaatgtttttttttttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTT
                                           ttttaat  putative branch site (score: 3)
                                    tttttttttttaatt  CT-rich tract
             atattttattttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttctttctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatttgatattttattttttaaaaaaatgtttttttttttaattgtagATCTCCTGTTCAAGGACTACCACAGTGACCAGAAGTTTACCATCACTACCTACTCACCCACTGGAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT