1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttctcttgaccttgtgttcttatgtttacaatgcgactttagattgctgcaatatatgattgctgcaccaaagcttattgagttatattttggtgcagAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCAGTTGGGTTAATAACAGGAGTTCCTACATTGGATGGTCCCACCATTGCCC
species | Glycine max |
transcript | GLYMA19G01260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTTGCTCTTACCAACCACCCCATCATTCTGAATCTCAGAACAACCAT AATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGGTATCTATTGCACTGGCAEST: gi|120532483|gb|EH260616.1|EH260616
genomic: CTCGTTGCTCTTACCAACCACCCCATCATTCTGAATCTCAGAACAACCATgtgagtctct ... tttggtgcagAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCA
EST: CTCGTTGCTCTTACCAACCACCCCATCATTCTGAATCTCAGAACAACCAT AATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCA
genomic: CTCGTTGCTCTTACCAACCACCCCATCATTCTGAATCTCAGAACAACCATgtgagtctct ... tttggtgcagAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCA
ttgctgcaatatatgattgctgcaccaaagcttattgagttatattttggtgcagAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCAGTTGGGTTAATAACAGGAGTTCCTACATTGGATGGTCCCACCATTGCCC
ttattgagttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctcttgaccttgtgttcttatgtttacaatgcgactttagattgctgcaatatatgattgctgcaccaaagcttattgagttatattttggtgcagAATGGGAGGTCATTTTCCTTGAAGCAGTGTGCGATATCTATTGCACTGGCAGTTGGGTTAATAACAGGAGTTCCTACATTGGATGGTCCCACCATTGCCC
- - - cttgacc
- - - - - - - tgtgttc
- - - - - - - - - - - - - - -acaatgc
- - - - - - - - - - - - - - - - - - - - - - -ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccaaa