1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtacacctaactatgattaatatttaattcttcaaaactttgtttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG
species | Glycine max |
transcript | GLYMA19G01210.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|151405370|gb|EV275184.1|EV275184
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCCCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|7589023|gb|AW704806.1|AW704806
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|21993661|gb|BQ785189.1|BQ785189
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|254344632|gb|GR855503.1|GR855503
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|151400680|gb|EV270494.1|EV270494
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|209713324|gb|BW684411.1|BW684411
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|33389351|gb|CA852558.1|CA852558
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTNCGCTCTNTTATTGNCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTATGGGGGTGTTCTACAAAGGGAATGAAEST: gi|9986232|gb|BE660340.1|BE660340
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTAATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAAEST: gi|254340369|gb|GR858494.1|GR858494
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
EST: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCAT GCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
genomic: CGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATgtaagcccaa ... ttgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAA
ttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG
ataaccgtgattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtacacctaactatgattaatatttaattcttcaaaactttgtttatgcatgataaccgtgattaatttttatttttttcccctatgattgagaacagGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG