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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttccctctcccaatattttcttcttcttcttcttattattattattatcattttttctatataaacctcaccttaattactctactcttctctctaattacaattttctattttgttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCTTCCTCTGCGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAA

Basic information

species Glycine max
transcript GLYMA19G01210.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713324|gb|BW684411.1|BW684411
EST:     ACAACTGCGACTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: ACAACTGCGACTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|38192042|gb|CF921248.1|CF921248
EST:     ACAACTGCGACTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: ACAACTGCGACTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|7589023|gb|AW704806.1|AW704806
EST:     GAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: GAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|9986232|gb|BE660340.1|BE660340
EST:     GAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: GAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|254344632|gb|GR855503.1|GR855503
EST:     CTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: CTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|21993661|gb|BQ785189.1|BQ785189
EST:     CCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: CCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|254340369|gb|GR858494.1|GR858494
EST:     TTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: TTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
EST: gi|13481183|gb|BG510526.1|BG510526
EST:     CTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTT                         TGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT
genomic: CTTAGTTCATCCCTTCTCAAGCCACCGAAGCCTCACTTTTgtattcttcc ... ttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttaattactctactcttctctctaattacaattttctattttgttttaattagTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCTTCCTCTGCGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAA
                     ctctaat  putative branch site (score: 3)
                                 ttttctattttgtttt  putative PPT
                    tctctaattacaattt  TA-rich tract