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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttctttgcatgcttcactttcattttcattcagatcccaaatcgttcaaagtaatgtgttcaatattcatgagctagcttttagggtttaattagggttctctatacaatttattaattaagctctggtgcttttgcaaattgcagGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCTCGCCCGAGGCATTGGCGAACCAAG

Basic information

species Glycine max
transcript GLYMA18G52260.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179839|gb|HO025054.1|HO025054
EST:     CCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGT                         GTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCT
genomic: CCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGTgtatgttttc ... caaattgcagGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagggttctctatacaatttattaattaagctctggtgcttttgcaaattgcagGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCTCGCCCGAGGCATTGGCGAACCAAG
                    tattaat  putative branch site (score: 2)
                                       cttttgc  putative PPT
      ttctctatacaattta  TA-rich tract