1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
taagtcttcgtcttctctgaactgcatcgctgctattgtcttctaaatttctgcattattatattaatttgtgcaaaagaaaattttctcacttttttttctctctatattgcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG
species | Glycine max |
transcript | GLYMA18G52210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|192328861|gb|FK023263.1|FK023263
genomic: TTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|298192082|gb|HO036164.1|HO036164
genomic: TTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTAATTTTTTGTCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAGGCEST: gi|23728045|gb|BU762064.1|BU762064
genomic: TTGATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: GTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|33388742|gb|CA851949.1|CA851949
genomic: GTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTAATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|298175521|gb|HO018232.1|HO018232
genomic: TTGATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTAATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGA AAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCEST: gi|298174943|gb|HO014860.1|HO014860
genomic: TTGATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGC
EST: TTAATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAA-G AAAGGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGGAG
genomic: TTGATTTTTTGCCCTAAAACCCTCGCTGCCGTCGTGGTGGCCGCCCAAGGtaagtcttcg ... gcttcacagaAAA-GAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAG
atttgtgcaaaagaaaattttctcacttttttttctctctatattgcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG
ttctcac putative branch site (score: 2)
ttttctcacttttttt CT-rich tract
aaaattttctcacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtcttcgtcttctctgaactgcatcgctgctattgtcttctaaatttctgcattattatattaatttgtgcaaaagaaaattttctcacttttttttctctctatattgcttcacagaAAAGAGAATAGAGAGCGCAAACGAGTCTTCATCTTCGACTCACCATGAAGCTCGTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC