1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatgcagagacttgtgtgcaaaataatgattttgcacttttgttatctttttattaggttgttcatatagtaaatattattattttttgttggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAATGCCGAGTTTTTGCTCCA
species | Glycine max |
transcript | GLYMA18G52130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGA GGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAAEST: gi|209711038|gb|BW681348.1|BW681348
genomic: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGAggtaacagaa ... tggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAA
EST: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGA GGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAAEST: gi|209696782|gb|BW680403.1|BW680403
genomic: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGAggtaacagaa ... tggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAA
EST: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGA GGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAA
genomic: ACCTCCAAGGTAATTGATTCCCATCTCCACGTGTGGGCTTCACCTCAAGAggtaacagaa ... tggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAA
tctttttattaggttgttcatatagtaaatattattattttttgttggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAATGCCGAGTTTTTGCTCCA
ttttttgtt CT-rich tract
ttattaggttgttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcagagacttgtgtgcaaaataatgattttgcacttttgttatctttttattaggttgttcatatagtaaatattattattttttgttggaaatgaaGGCTGGCAGATTCCCTTATTCTCTTGGACAAGAACCTACTTTACCAGGAAATGCCGAGTTTTTGCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
tatgcag
- - - - - - tgtgtgc
- - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtt