Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtcagtccctaaccactgatttcttccttcaatttttggaccatagcgttgtttccgatcatcttctgaactgattcattctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATTTGCAGGTGGACACTGGCAGTGACATTATGTGGGTGAATTGCATTCAGTG

Basic information

species Glycine max
transcript GLYMA18G51920.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610737|gb|DB963123.1|DB963123
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|209707190|gb|BW656808.1|BW656808
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298192972|gb|HO033417.1|HO033417
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298182938|gb|HO028151.1|HO028151
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298192897|gb|HO033331.1|HO033331
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|213613481|gb|DB956939.1|DB956939
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298186811|gb|HO037444.1|HO037444
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaccatagcgttgtttccgatcatcttctgaactgattcattctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATTTGCAGGTGGACACTGGCAGTGACATTATGTGGGTGAATTGCATTCAGTG
                                  aactgat  putative branch site (score: 3)
                                        ttcattct  CT-rich tract
                                           attctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtcagtccctaaccactgatttcttccttcaatttttggaccatagcgttgtttccgatcatcttctgaactgattcattctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATTTGCAGGTGGACACTGGCAGTGACATTATGTGGGTGAATTGCATTCAGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA