1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtagtaatgtagtatatagtacaggaatatttagaggttcaacatttactttgtttccttttaattactttccaccagctaattgtctgttaatctttcaGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGATGTTATATCCTGGACCCCTGATGGATATGT
species | Glycine max |
transcript | GLYMA18G50750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGCATTTTGTTCTTGGTTCTGCTGTCTTGTACTTGCTTCACTTCAACA GATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGATEST: gi|16996760|gb|BM086132.1|BM086132
genomic: CTAGCATTTTGTTCTTGGTTCTGCTGTCTTGTACTTGCTTCACTTCAACAggttcaccac ... taatctttcaGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGAT
EST: CTAGCATTTTGTTCTTGGTTCTGCTGTCTTGTACTTGCTTCACTTCAACA GATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGAT
genomic: CTAGCATTTTGTTCTTGGTTCTGCTGTCTTGTACTTGCTTCACTTCAACAggttcaccac ... taatctttcaGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGAT
ttactttgtttccttttaattactttccaccagctaattgtctgttaatctttcaGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGATGTTATATCCTGGACCCCTGATGGATATGT
tgttaat putative branch site (score: 3)
tctttc CT-rich tract
ttttaattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaatgtagtatatagtacaggaatatttagaggttcaacatttactttgtttccttttaattactttccaccagctaattgtctgttaatctttcaGATGCTTATGATCCGCTTGACCCAAATGGGAATATAACAATCAAATGGGATGTTATATCCTGGACCCCTGATGGATATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtctg