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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctgatgtagatttcaacatattttgcatttgtttatgcgtctagatatattttcatatgactgattttgtgttgtttcttccacaattttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAATTGGGAAAAACACTCGGGATTGGATCTTTTGG

Basic information

species Glycine max
transcript GLYMA18G49770.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729574|gb|BW651888.1|BW651888
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAGCACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|207785632|gb|GD755729.1|GD755729
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|208198039|gb|GD995928.1|GD995928
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|27445912|gb|CA953035.1|CA953035
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|192308573|gb|FK002469.1|FK002469
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGAT-GACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|209717385|gb|BW659061.1|BW659061
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|10710463|gb|BF010181.1|BF010181
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|193336070|gb|FK298054.1|FK298054
EST:     GTTCACTCC-ACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: GTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|213615096|gb|DB962808.1|DB962808
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|213605934|gb|DB968658.1|DB968658
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTA-AA-TGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatattttcatatgactgattttgtgttgtttcttccacaattttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAATTGGGAAAAACACTCGGGATTGGATCTTTTGG
               gactgat  putative branch site (score: 3)
                               tttcttccacaatttt  putative PPT
     attttcatat  TA-rich tract