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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgcttcttcaaaacttcaaattaatgttgattcttcttaccttcaatttttgttttccttatgtaattgacttcttacttctttcactgtgatttgctttcagGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT

Basic information

species Glycine max
transcript GLYMA18G49210.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0108g00190.t01 (Vitis vinifera), 3'ss of exon 1
gtatatatgcttcttcaaaacttcaaattaatgttgattcttcttaccttcaatttttgttttccttatgtaattgacttcttacttctttcactgtgatttgctttc-agGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
                      ||   | | | | | ||||||      |    || |||||   |   ||  || |  | ||   ||    ||| |  |||  |||| ||| ||||||| ||||||||||||||| |||||||| | |||||| ||||  
---------------------gtctgttcattttggcttcttcactttctgttattctgtttgtttggggtttttaagatttt--ctcaacaactttcttttcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAGCTAAGGAGTACAAG

upper sequence: GLYMA18G49210.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv14s0108g00270.t01 (Vitis vinifera), 3'ss of exon 1
gtatatatgcttcttcaaaacttcaaattaatgttgattcttcttaccttcaatttttgttttccttatgtaattgacttcttacttctttcactgtgatttgctttc-agGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
                      ||   | | | | | ||||||      |    || |||||   |   ||  || |  | ||   ||    ||| |  |||  |||| ||| ||||||| ||||||||||||||| ||||||||   |||||| ||||  
---------------------gtctgttcattttggcttcttcactttctgttattctgtttgtttggggtttttaagatttt--ctcaacaactttcttttcttttccagGGAAGTTGGCTGATGTTGTTCTTGGGTATGATTCAACTAAGGAGTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393375|gb|EV263250.1|EV263250
EST:     CACCAACTGGGGTGCTTCAATTTTGTCCCTGGTGATTCCTGATAAGAATG                         GAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
genomic: CACCAACTGGGGTGCTTCAATTTTGTCCCTGGTGATTCCTGATAAGAATGgtatatatgc ... ttgctttcagGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
EST: gi|209722549|gb|BW682647.1|BW682647
EST:     CACCAACTGGGGTGCTTCAATTTTGTCCCTGGTGATTCCTGATAAGAATG                         GAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
genomic: CACCAACTGGGGTGCTTCAATTTTGTCCCTGGTGATTCCTGATAAGAATGgtatatatgc ... ttgctttcagGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttccttatgtaattgacttcttacttctttcactgtgatttgctttcagGAAAGTTGGGTGATGTTGTTCTTGGATATGATTCTGTTAAGGATTACAGT
                       ttcttac  putative branch site (score: 2)
                                            tttgctttc  putative PPT
          ttatgtaatt  TA-rich tract