1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgccaaaaattaatctaccaatagttaattccacttctcatttctttcccttaattttaaatgctatgataagcatatttatactatggctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTA
species | Glycine max |
transcript | GLYMA18G49130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAG GTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAEST: gi|5770582|gb|AI973756.1|AI973756
genomic: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGgtacgtggag ... ctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
EST: GGGATTGTTCCTTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAG GCGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAEST: gi|192326471|gb|FK017248.1|FK017248
genomic: GGGATTGTTCC-TTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGgtacgtggag ... ctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
EST: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAG GTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAEST: gi|192333287|gb|FK026168.1|FK026168
genomic: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGgtacgtggag ... ctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
EST: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAG -TGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAEST: gi|192323411|gb|FK015297.1|FK015297
genomic: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGgtacgtggag ... ctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
EST: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAG GTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
genomic: TGGGATTGTTCCTTCCCCTCAAAACATTGAAATGCTTCTCTCTGTTTTAGgtacgtggag ... ctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCA
tttcccttaattttaaatgctatgataagcatatttatactatggctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTA
ccttaat putative branch site (score: 4)
ttaattttaaatgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgccaaaaattaatctaccaatagttaattccacttctcatttctttcccttaattttaaatgctatgataagcatatttatactatggctttgtgcagGTGAAATAAAACAAGAAGACGTTGGCTTAAAGCCTGAAATGGCATTTTTCAGTTCAAATAATCCTCGAAGAACTCCAAAAATTACATACCTGCACATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC