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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccctagatctcgattttcccccaattttttctctatgcgctggatctgaatattttccttgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAGCCAGCGATTCACGCCATGGCCGACAAGTTCAACGACGTTGACTTCGTCA

Basic information

species Glycine max
transcript GLYMA18G49040.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7684955|gb|AW755603.1|AW755603
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|19937420|gb|BQ081284.1|BQ081284
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|5057919|gb|AI736395.1|AI736395
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|17519888|gb|BM188930.1|BM188930
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|192333447|gb|FK023976.1|FK023976
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|7684952|gb|AW755600.1|AW755600
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|4291394|gb|AI437613.1|AI437613
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|5761106|gb|AI966469.1|AI966469
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|8669107|gb|BE190214.1|BE190214
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
EST: gi|8283327|gb|BE020888.1|BE020888
EST:     CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTC                         GTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG
genomic: CGCCGCGCTGGCAGCTCTACTTCAACGAGATCAAAGATACCGATAAGCTCgtaaatccct ... tgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcccccaattttttctctatgcgctggatctgaatattttccttgaaaattagGTTGTGATAGATTTCTCGGCGTCGTGGTGCGGTCCTTGCAAATTCATAGAGCCAGCGATTCACGCCATGGCCGACAAGTTCAACGACGTTGACTTCGTCA
                                    tattttcctt  CT-rich tract
 aattttttctctat  TA-rich tract