1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgcatgacatgagaattgagaacgctgtttttgctgattcaattttgtgaatcagttcctgcatgtctgctgtaattttttgagtcgtgattttttgcaGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAG
species | Glycine max |
transcript | GLYMA18G48710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACA GCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCEST: gi|192333028|gb|FK024677.1|FK024677
genomic: CCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAggttcttctt ... attttttgcaGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGC
EST: CCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACA GCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGC
genomic: CCCAACGTCTTCTCTTTCTCTCAATTTCTCGCCCTCCCTAACCTTCTACAggttcttctt ... attttttgcaGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGC
ttgtgaatcagttcctgcatgtctgctgtaattttttgagtcgtgattttttgcaGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAG
ttttttgc CT-rich tract
tgtaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatgacatgagaattgagaacgctgtttttgctgattcaattttgtgaatcagttcctgcatgtctgctgtaattttttgagtcgtgattttttgcaGCTTGAAGCAACTGAGAATTCTACTTATCTTGATATGCTTCGGTTGTTTGCACACGGAACATGGAGTGATTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- gcatgac
- - - - - - - - - - - - gctgttt
- - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgta