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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcttgttgttgctcatttagctataacagtttctaccatgaaattatgatgttttttttgtttgtgatgttgctgaatttcccagcatttgcattaatgcttggctgcatgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCTCTTGACCTCGAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAG

Basic information

species Glycine max
transcript GLYMA18G48530.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713330|gb|BW684417.1|BW684417
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
EST: gi|209706920|gb|BW653161.1|BW653161
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
EST: gi|209727062|gb|BW680342.1|BW680342
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
EST: gi|213587648|gb|DB971371.1|DB971371
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
EST: gi|213613807|gb|DB961304.1|DB961304
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
EST: gi|213608773|gb|DB962867.1|DB962867
EST:     CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAG                         TGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT
genomic: CGTGTCTTCTTTTTACTTTCCTGCTGGAAGCTGTTCATGGCAGCAAAAAGgcaagcttgt ... atgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgttgctgaatttcccagcatttgcattaatgcttggctgcatgtttgcagTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACCTCTCTTGACCTCGAAATCGCTACCCATTCTCATTATGATTTACTAGCTTCAG
                            cattaat  putative branch site (score: 3)
                             attaat  TA-rich tract