1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcttctgctattttatttggagcaaaatgtctctatttaatctagatttcatgtacctatttttttactgtgctatgtgctgtttgtttgtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCT
species | Glycine max |
transcript | GLYMA18G48220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGC ATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTEST: gi|120491027|gb|EH219194.1|EH219194
genomic: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGGttccatctta ... gtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTT
EST: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGC ATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTEST: gi|26047105|gb|CA783996.1|CA783996
genomic: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGGttccatctta ... gtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTT
EST: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGC ATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTEST: gi|298182209|gb|HO026384.1|HO026384
genomic: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGGttccatctta ... gtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTT
EST: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGC ATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTT
genomic: GAAGTTGCTCGAAGATCTTGATGCCCTCGCTGGAACTATTTCCGTCAAGGttccatctta ... gtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTT
gatttcatgtacctatttttttactgtgctatgtgctgtttgtttgtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCT
tacctattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttctgctattttatttggagcaaaatgtctctatttaatctagatttcatgtacctatttttttactgtgctatgtgctgtttgtttgtggaatagcATTGTTCTGATGAAGCTAGCACAACAAGGCCACTTATAGTTGTCACTGCTTCAGTTGATAAGATTGTACTAAAGAAGCCAATTAGTGTTGACATTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- cttctgc
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt