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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaattacaaattcattctactatcaatctatctatcattcaattgtacatatatatatggtcatattgtcattattgatttttgtaagCGTTATTATGAAAGTCATATCTAG

Basic information

species Glycine max
transcript GLYMA18G48130.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattcaattgtacatatatatatggtcatattgtcattattgatttttgtaagCGTTATTATGAAAGTCATATCTAG
                                       tattgat  putative branch site (score: 3)
                                             tttttgt  CT-rich tract
                             atattgtcattattga  TA-rich tract