1 5' 3' |
...tttctttttcttttccgtatggtggtttaattgaaggctatgggaaatagcctagtcttttcttgtcttgttcactgagttccaatttcttaattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTGGATCAAAGAAACAGTCTCAAGAAAATCAAATGGAGAAATTGGACAGCAA
species | Glycine max |
transcript | GLYMA18G46590.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTA TTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTGEST: gi|208094733|gb|GD896530.1|GD896530
genomic: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTGtaagtctcta ... taattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTG
EST: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTA TTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTGEST: gi|254329208|gb|GR833580.1|GR833580
genomic: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTGtaagtctcta ... taattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTG
EST: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTA TTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTG
genomic: TTCATATTTTCTCTTAACTGCTGATTATGAACCTACTGTTCTAGACCCTGtaagtctcta ... taattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTG
aatagcctagtcttttcttgtcttgttcactgagttccaatttcttaattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTGGATCAAAGAAACAGTCTCAAGAAAATCAAATGGAGAAATTGGACAGCAA
tcttaat putative branch site (score: 3)
tttctt CT-rich tract
aatttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctttttcttttccgtatggtggtttaattgaaggctatgggaaatagcctagtcttttcttgtcttgttcactgagttccaatttcttaattgcagaTTAAGAAGGGATTGCTTTCAGCTGAGAGCACTGTGAAAGAGTATGTTTTTGGATCAAAGAAACAGTCTCAAGAAAATCAAATGGAGAAATTGGACAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -tggtggt