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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgttcttttggataagtttatccaaaacagaccctttgttcctttttatatcatatttttactttaccaattttacatgattgttttggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG

Basic information

species Glycine max
transcript GLYMA18G46470.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310351|gb|FK002231.1|FK002231
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|15337035|gb|BI497691.1|BI497691
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|4296039|gb|AI442418.1|AI442418
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|298192129|gb|HO036211.1|HO036211
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|151394356|gb|EV264227.1|EV264227
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|12689896|gb|BG156232.1|BG156232
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|58022686|gb|CX709427.1|CX709427
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|192307960|gb|FG998963.1|FG998963
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|58019637|gb|CX706379.1|CX706379
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
EST: gi|192310350|gb|FK002230.1|FK002230
EST:     GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGA                         AGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
genomic: GAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAgtgagttttt ... ggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatatcatatttttactttaccaattttacatgattgttttggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG
     atatcatatttttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatgttcttttggataagtttatccaaaacagaccctttgttcctttttatatcatatttttactttaccaattttacatgattgttttggaataacagAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - -cttttgg
- - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - cagaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatga