Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgttctatcatttgatgtatgtgccttttgagaattgaagaaaatggagcttatttgaaggtttgaagtttgataaaacaatgttttaaaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTGATTGCTTTGTTTGATGTTGATGGAACTCTTACAGCTCCCAGGAA

Basic information

species Glycine max
transcript GLYMA18G46390.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618074|gb|DB963707.1|DB963707
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|192303883|gb|FG998235.1|FG998235
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGGTTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|213617059|gb|DB961539.1|DB961539
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|16348803|gb|BI974398.1|BI974398
EST:     CTGCTTCAAGCTCTGTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: CTGCTTCAAGCTCTGTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|192298879|gb|FG987624.1|FG987624
EST:     CCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: CCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|298189249|gb|HO037652.1|HO037652
EST:     CTGTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: CTGTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|209717163|gb|BW657626.1|BW657626
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|6727118|gb|AW311472.1|AW311472
EST:     CCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: CCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|192299912|gb|FG991786.1|FG991786
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
EST: gi|151402943|gb|EV272756.1|EV272756
EST:     GTCCCCTTCTTCCACATCCACACTCCCCTCTCA                         GGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG
genomic: GTCCCCTTCTTCCACATCCACACTCCCCTCTCAggcaagtttt ... aaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggagcttatttgaaggtttgaagtttgataaaacaatgttttaaaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTGATTGCTTTGTTTGATGTTGATGGAACTCTTACAGCTCCCAGGAA
                        gtttgat  putative branch site (score: 5)
                  tttgaagtttgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttgttctatcatttgatgtatgtgccttttgagaattgaagaaaatggagcttatttgaaggtttgaagtttgataaaacaatgttttaaaattttgcaGGTTTTTGTGGATAAGATTGAGCTATAATGGCTGCCAGGAGACCGGGTTTGATTGCTTTGTTTGATGTTGATGGAACTCTTACAGCTCCCAGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
cttgttc
- - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa