1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatttttgatatcttgtatgttatgttatgttggatatggaatggttaaagaaaggatggacgtggtgtttgataatgatgaaatgttgtttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGC
species | Glycine max |
transcript | GLYMA18G46230.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGT TTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATEST: gi|193704837|gb|FK646581.1|FK646581
genomic: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGGttctataccc ... ttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAAT
EST: TCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGT TTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATEST: gi|298180220|gb|HO025435.1|HO025435
genomic: TCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGGttctataccc ... ttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAAT
EST: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGT TTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATEST: gi|193493583|gb|FK458765.1|FK458765
genomic: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGGttctataccc ... ttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAAT
EST: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGT TTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAAT
genomic: CCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGGttctataccc ... ttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAAT
ttaaagaaaggatggacgtggtgtttgataatgatgaaatgttgtttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGC
gtttgat putative branch site (score: 5)
ttgtttctt putative PPT
tttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttgatatcttgtatgttatgttatgttggatatggaatggttaaagaaaggatggacgtggtgtttgataatgatgaaatgttgtttcttgtagtTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGTGAGATATTTCCGGTCTTCTGGCATTGAATTGGC
- - - - - - - tgtatgt
- - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt