1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atcctccatattgcaaggtttacacaacatcatttttggcttttaatggttgtcctttgatgtgtggttctcatctgatggaatcttctttgtgtttcagCTTTTCTGGGCCTTGAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAACCTCTACCACAAGAAAGCATAGTTTTTTTGGGTTAATCATACTTG
species | Glycine max |
transcript | GLYMA18G45780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTATTGAAAACTACTACAATTCCGAGTTGC-TTTTTTCCCTAGTTG CTTTTCTGGGCCTTGAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAA
genomic: TGGCTTATTGAAAACTACTACAATTCCGAGTTGCTTTTTTTCCCTAGTTGgtaagaacaa ... tgtgtttcagCTTTTCTGGGCCTTGAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAA
atggttgtcctttgatgtgtggttctcatctgatggaatcttctttgtgtttcagCTTTTCTGGGCCTTGAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAACCTCTACCACAAGAAAGCATAGTTTTTTTGGGTTAATCATACTTG
tcttctttgtgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcctccatattgcaaggtttacacaacatcatttttggcttttaatggttgtcctttgatgtgtggttctcatctgatggaatcttctttgtgtttcagCTTTTCTGGGCCTTGAAATCTTGCTTGGAGAAGGCTCAATTTTGGTGGAAACCTCTACCACAAGAAAGCATAGTTTTTTTGGGTTAATCATACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-tcctcca
- - - - - -tgcaagg
- - - - - - - - - - - cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgatg