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...ttttggttttgctaaaatactcaaatttttgttatggcatgttttctaatgaatcattttgctttctgagtacattgtttgttgatctcttgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCATGGAAGGAAGAGAAGGCTTCAGTTCTGGGGTTACAGTGATAGGGGCAGAA
species | Glycine max |
transcript | GLYMA18G45300.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGA TGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCATEST: gi|27423466|gb|CA934986.1|CA934986
genomic: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGGtatgtaaaaa ... tgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCAT
EST: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGA TGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTG--ATATGCGCATEST: gi|18735432|gb|BM528762.1|BM528762
genomic: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGGtatgtaaaaa ... tgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCAT
EST: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGA TGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCATEST: gi|18041522|gb|BM309816.1|BM309816
genomic: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGGtatgtaaaaa ... tgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCAT
EST: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGA TGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCAT
genomic: GACAGGTCATGATCTTTGTATTCTGAGCAGTATTCAGAGTTTGATGTTGGtatgtaaaaa ... tgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCAT
ctaatgaatcattttgctttctgagtacattgtttgttgatctcttgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCATGGAAGGAAGAGAAGGCTTCAGTTCTGGGGTTACAGTGATAGGGGCAGAA
tctcttgctt CT-rich tract
aatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggttttgctaaaatactcaaatttttgttatggcatgttttctaatgaatcattttgctttctgagtacattgtttgttgatctcttgcttgtagaTGTTGGTTTGATTGTGTGGACTTAGGAGTGAATAGTTTGATATATGCGCATGGAAGGAAGAGAAGGCTTCAGTTCTGGGGTTACAGTGATAGGGGCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - ggttttg
- - - - - - - - - actcaaa
- - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt