1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctatatattgtgattaggttagcttatggtaacaaagctttttgtggttgtgacttggttttttcaattttgttctgtttccgggtgagttgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTTCCTGTGTTGCGGGAAACAAGAACAACGACCTCTTCTGCTGGGTTTTGC
species | Glycine max |
transcript | GLYMA18G44520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTG ATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTEST: gi|192294428|gb|FG987357.1|FG987357
genomic: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTGgtactaaccc ... tgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTT
EST: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTG ATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTEST: gi|10231999|gb|BE800887.1|BE800887
genomic: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTGgtactaaccc ... tgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTT
EST: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTG ATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTEST: gi|213592754|gb|DB957812.1|DB957812
genomic: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTGgtactaaccc ... tgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTT
EST: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTG ATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTT
genomic: CCTCAAAACAACGCATTCCTTTCACTGCCCCTTCCCAATTCCCTTCCCTGgtactaaccc ... tgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTT
ggttgtgacttggttttttcaattttgttctgtttccgggtgagttgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTTCCTGTGTTGCGGGAAACAAGAACAACGACCTCTTCTGCTGGGTTTTGC
agttgac putative branch site (score: 4)
ttttttcaattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatatattgtgattaggttagcttatggtaacaaagctttttgtggttgtgacttggttttttcaattttgttctgtttccgggtgagttgacaagcagATTGTCAATTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTCGTTTCCTGTGTTGCGGGAAACAAGAACAACGACCTCTTCTGCTGGGTTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - aacaaagc
- - - - - - - - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgag