1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggttagtacaaacccgtaacttaaatttcacaacatagcataatcatcatatctcacattaattacttagcttgatgcaaagaaaatactacgaacacaaaacaaacccccttaatctctcatcttaggttggtctcaatttttcatcatcatatattcatgcatctaatttcatatgggtgtgttaatattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTT
species | Glycine max |
transcript | GLYMA18G42940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAA GCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTEST: gi|193721720|gb|FK658204.1|FK658204
genomic: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAggttagtaca ... atattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTT
EST: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAA GCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGEST: gi|298175918|gb|HO015323.1|HO015323
genomic: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAggttagtaca ... atattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTG
EST: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAA GCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTEST: gi|18041290|gb|BM309584.1|BM309584
genomic: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAggttagtaca ... atattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTT
EST: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAA GCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTT
genomic: CATTGAACTTGAAGCCAAGTGAGACCAAGGGAAAGACCATCACTTGCAAAggttagtaca ... atattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTT
ttcatcatcatatattcatgcatctaatttcatatgggtgtgttaatattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTT
tgttaat putative branch site (score: 3)
tgttaatattcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttagtacaaacccgtaacttaaatttcacaacatagcataatcatcatatctcacattaattacttagcttgatgcaaagaaaatactacgaacacaaaacaaacccccttaatctctcatcttaggttggtctcaatttttcatcatcatatattcatgcatctaatttcatatgggtgtgttaatattcattaGCCGCGGTGGCATATGGTCCTGGAGAGCCCTTTGTGGTGGAAAATATTCTTGTTCATCCTCCTCAGAAAATGGAGGTTCGAATCAAGATCCTCTACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG