1 5' 3' | 2 5' 3' | 3 5' 3' |
...actttcgcatagcgaagagcctctgggcaatggggtacgaagtttttattatggacaaatagtttctgtctaattgtttgagtgggttttgtgaatgcagGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTGGGAGC
species | Glycine max |
transcript | GLYMA18G42630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGTGGAATGATCTTTGCCCTTGTCTATTGTACTGCTGGTATCTCAG GGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGTEST: gi|192305735|gb|FG995369.1|FG995369
genomic: ATTTGGTGGAATGATCTTTGCCCTTGTCTATTGTACTGCTGGTATCTCAGgttaggcaaa ... gtgaatgcagGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGT
EST: ATTTGGTGGAATGATCTTTGCCCTTGTCTATTGTACTGCTGGTATCTCAG GGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGT
genomic: ATTTGGTGGAATGATCTTTGCCCTTGTCTATTGTACTGCTGGTATCTCAGgttaggcaaa ... gtgaatgcagGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGT
ttattatggacaaatagtttctgtctaattgtttgagtgggttttgtgaatgcagGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTGGGAGC
gtctaat putative branch site (score: 3)
aaatagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttcgcatagcgaagagcctctgggcaatggggtacgaagtttttattatggacaaatagtttctgtctaattgtttgagtgggttttgtgaatgcagGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTTTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTGGGAGC
- - - - - - - - - gcctctg
- - - - - - - - - - - - -ggcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtggg