1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggtgttttgattgctttccttggtgtcgtcttttaatttggaattaatattctgttcgttgactttgatcttgttttgtgaacttgtattggcgcagTTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGTCGCTGTGG
species | Glycine max |
transcript | GLYMA18G16700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTGTTTGGGGGTGCCGAGTGGGATTAACATTTAG TTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTT
genomic: AAGTGTTTGGGGGTGCCGAGTGGGATTAACATTTAGgttaacaact ... attggcgcagTTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTT
attaatattctgttcgttgactttgatcttgttttgtgaacttgtattggcgcagTTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGTCGCTGTGG
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtgttttgattgctttccttggtgtcgtcttttaatttggaattaatattctgttcgttgactttgatcttgttttgtgaacttgtattggcgcagTTACCACGGTTATACAATGTGTACAAGAATATGGGAATTGTTACCTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGTCGCTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -tgttttg
- - - - - - - tgctttc
- - - - - - - - - - - -tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactttg