Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgatttttcctttgaatcatttgtgttttttttttcattttcatgtattaatttgcacgaatatatcacttatatcgataatcgcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACCGGAGTG

Basic information

species Glycine max
transcript GLYMA18G16260.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16260.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G150616_T01 (Zea mays), 3'ss of exon 1
----gtaaccgattt-----ttcctttgaatcatttgtgttttttttttcattttcatgtattaatttgcacgaatatatcacttat-atcgataat-cgcaaact---cagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACCGGAGTG
    ||| |||   |     ||||||| || |  | | | |  |   | || ||   ||  ||| | |   |   |   |  |||||  | | |  | |||    |   ||||||| |||| |||||| || |||| |||||||||||||||| |||| || ||||| ||||  || || 
gtgggtatccgtcctaaggattcctttcaagctctggggatcatgggtgcagttcgctggtttattctcttctgttggtttgcttattgttgttggttcgctttttccgcagATCTGCTGTACAAGGACTACCAGACTGACCACAAGTTCACCCTCACTACCTACACCTCCAATGGCGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401380|gb|EV271194.1|EV271194
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|151411124|gb|EV280935.1|EV280935
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|8669464|gb|BE190571.1|BE190571
EST:     GGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: GGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|22524908|gb|BU083719.1|BU083719
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|17024047|gb|BM095081.1|BM095081
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|192294289|gb|FG986378.1|FG986378
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|151395956|gb|EV265833.1|EV265833
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
EST: gi|254325661|gb|GR838542.1|GR838542
EST:     ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCG                         ATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT
genomic: ATGGTGAAAGGTCCAGGCCTCTACTCTGACATTGGCAAGAGAGCTCGCGgtaaccgatt ... gcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatgtattaatttgcacgaatatatcacttatatcgataatcgcaaactcagATCTTCTGTTCAAGGATTATCAGAATGACCACAAGTTCACCATCACCACTTACACTTCCACCGGAGTG
       tattaat  putative branch site (score: 2)
                     aatatatcacttatat  TA-rich tract