1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taaggaggtttaataagaacaaatcggttactagttttcttattatcaagtaatgattctgtccttcaagaaaaaagtaatgattttgtatttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCTTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCA
species | Glycine max |
transcript | GLYMA18G14740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGNGATCEST: gi|120531737|gb|EH259870.1|EH259870
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: ATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCEST: gi|6134794|gb|AW133187.1|AW133187
genomic: ATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCEST: gi|9259656|gb|BE347803.1|BE347803
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: GAAGATTTTTAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCEST: gi|120533482|gb|EH261615.1|EH261615
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: TTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCEST: gi|120532136|gb|EH260269.1|EH260269
genomic: TTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCEST: gi|19452389|gb|BM953799.1|BM953799
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
EST: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTG GTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
genomic: GAAGATTTTCAAGACCATAACTGGAATCCCATTTCTCATCCCTACAACTGgtatatataa ... tttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATC
tcaagtaatgattctgtccttcaagaaaaaagtaatgattttgtatttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCTTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCA
aaaaaagtaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaggaggtttaataagaacaaatcggttactagttttcttattatcaagtaatgattctgtccttcaagaaaaaagtaatgattttgtatttggttcagGTACTGGTGCTTGGGAGAGTGCTCTCACAAACACACTGTCTCCTGGGGATCGAATTGTATCTTTCCTGATTGGCCAATTCAGCTTGCTTTGGATTGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - aagaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa