1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcaaattttggtcactattctttgttggtctatttaatgtttcttagtatatgttgttgttgtcaatttgattggttaattgtgaactgcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
species | Glycine max |
transcript | GLYMA18G13700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTT GGCACACAATTGATGACCCAAGAGCGCAEST: gi|151394940|gb|EV264811.1|EV264811
genomic: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTTggtactctct ... gcaaatctcaGGCACACAATTGATGACCCAAGAGCGCA
EST: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTT GGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATACEST: gi|151402482|gb|EV272295.1|EV272295
genomic: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTTggtactctct ... gcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
EST: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTT GGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATACEST: gi|192299424|gb|FG988737.1|FG988737
genomic: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTTggtactctct ... gcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
EST: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTT GGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
genomic: ATGATAGGTGTGGTGAAGTCTGTGCTGAATATGCCAAGACATTTTATCTTggtactctct ... gcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
ttagtatatgttgttgttgtcaatttgattggttaattgtgaactgcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
ggttaat putative branch site (score: 4)
aatttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaattttggtcactattctttgttggtctatttaatgtttcttagtatatgttgttgttgtcaatttgattggttaattgtgaactgcaaatctcaGGCACACAATTGATGACCCAAGAGCGCAGAAAAGCCATCTGGGCCATATAC
- - - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaac