1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccttttattaattttgcttttctagttcatttttctgatgctgtgagtgtgaagagttcataatggatgataatgtttttttttggtatgttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGC
species | Glycine max |
transcript | GLYMA18G13270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGT TTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCEST: gi|6567315|gb|AW234926.1|AW234926
genomic: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGGtaatacaatc ... ttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGC
EST: GAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGT TTCACCAGTACCAGGTTGTTGGGAGGGCTCTTCCCACTGAAACTGATGTGCEST: gi|120492116|gb|EH220283.1|EH220283
genomic: GAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGGtaatacaatc ... ttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGC
EST: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGT TTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCEST: gi|192294878|gb|FG987567.1|FG987567
genomic: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGGtaatacaatc ... ttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGC
EST: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGT TTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGC
genomic: GCAACTGATAGAACACTAAGCAGTTGCTACCATGGTCACCTTCAGGGtaatacaatc ... ttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGC
agtgtgaagagttcataatggatgataatgtttttttttggtatgttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGC
atgataatgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttttattaattttgcttttctagttcatttttctgatgctgtgagtgtgaagagttcataatggatgataatgtttttttttggtatgttgaatcagtTTCACCAGTACCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - tgctttt
- - - - - - - - - - - - - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - - - gagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatga