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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttcgttctctctgttgcaaaaatctccacttttttgtttttttgtttactttttcgtttctgtgtcttggtcttttgcaccagaacctctcatttttctctcttatttttcaGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGA

Basic information

species Glycine max
transcript GLYMA18G12920.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G12920.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 3'ss of exon 1
ggttcgttctctctgttgcaaaaatctccacttttttgtttttttgtttactttttcgtttctgtgtc-ttggtcttttgcacca--gaacctctcatttttctctcttatttttcaGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGA-
                          | |  | | |||||||| ||||  | | ||    | | | |  || ||||| |  |     ||| || || | | ||||| ||  |    |||||||||||||||||| ||||| ||||| |||||||||||  || | |||||  |  |    ||||| ||   ||||||||| 
-------------------------gtactttctattgtttttctgttgccctgttgtactatatttgattagtcttatttattgctgaatctttcttctgtctct-ttggtgagtagTTGTGACTTTGCTTGACTACGGAGCTGGAAATGTTCGGAGCATCCGCAATGCTCTTCGTCATCTCGGCTTCAGCATCAAAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193585490|gb|FK539476.1|FK539476
EST:     CCAAACCATCAAAGAGTTTCTCGGTTGGTGCCTCCTCTTCTAGGGATTCT                         GTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAAT
genomic: CCAAACCATCAAAGAGTTTCTCGGTTGGTGCCTCCTCTTCTAGGGATTCTggttcgttct ... ttatttttcaGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtgtcttggtcttttgcaccagaacctctcatttttctctcttatttttcaGTTGTGACTTTGCTTGATTACGGTGCTGGCAATGTTCGGAGTGTCAGGAATGCAATCAGATTCCTCGGGTTTGACATCAAAGA
                            cctctcatttttctct  CT-rich tract
                                           tcttattttt  TA-rich tract