1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttttttgaaggtgcggccttggttatagactttgactcaaattgactgtgtgatataaactcttattggtgcttgattttgtcatcatttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGAATGGGCTTGTACCAGCCA
species | Glycine max |
transcript | GLYMA18G08770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGC CATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAAEST: gi|15286187|gb|BI470078.1|BI470078
genomic: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGCcgtaagcatc ... ttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAA
EST: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGC CATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAAEST: gi|9259192|gb|BE347339.1|BE347339
genomic: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGCcgtaagcatc ... ttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAA
EST: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGC CATTACAAAATTACCTGGGACTGAGGTATTC
genomic: TTCCGGCTATTCTCTGTCCCAAACTTTTCCACTCGCGTTTCTCCGATCGCcgtaagcatc ... ttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTC
gactgtgtgatataaactcttattggtgcttgattttgtcatcatttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGAATGGGCTTGTACCAGCCA
tcatcatttctttt CT-rich tract
atataaactcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttgaaggtgcggccttggttatagactttgactcaaattgactgtgtgatataaactcttattggtgcttgattttgtcatcatttcttttgcaGATTACAAAATTACCTGGGACTGAGGTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGAATGGGCTTGTACCAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - -tgcggcc
- - - - - - - - - - - - - - -gactttg
- - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatc