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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caattttctgagttctgtttttttttttttttgcccgttttatttgagaaggaaaaagttgtttctgttattttacactgtgtttggcttttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGAGACCATAAAGAATTGGTTTCAAGATGGGCTGTTCTACAGGAGACGCGTG

Basic information

species Glycine max
transcript GLYMA18G07900.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042386|gb|AW472280.1|AW472280
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298173185|gb|HO020169.1|HO020169
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298170205|gb|HO018829.1|HO018829
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298174039|gb|HO017375.1|HO017375
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|9901448|gb|BE610416.1|BE610416
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|151396851|gb|EV266724.1|EV266724
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298187066|gb|HO034215.1|HO034215
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|151409640|gb|EV279448.1|EV279448
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCCCCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298169444|gb|HO020804.1|HO020804
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|298190464|gb|HO032585.1|HO032585
EST:     GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: GGGTGCGACGGTCCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
EST: gi|19935346|gb|BQ080376.1|BQ080376
EST:     CCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGG                         AAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA
genomic: CCTCCGCCCTAGATCCCACCTCCGACGCCCCTCCAAGGgttagggttt ... ttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaaggaaaaagttgtttctgttattttacactgtgtttggcttttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGAGACCATAAAGAATTGGTTTCAAGATGGGCTGTTCTACAGGAGACGCGTG
                                          cttttgttttc  CT-rich tract
                tttctgttatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caattttctgagttctgtttttttttttttttgcccgttttatttgagaaggaaaaagttgtttctgttattttacactgtgtttggcttttgttttcagAAACAAGCTGTCAAGAAAGATGTGTTCCGGGTGTTTGCTGAGAAGGTTAGAGACCATAAAGAATTGGTTTCAAGATGGGCTGTTCTACAGGAGACGCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - -ctgagtt
- - - - - - - - - - - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtttg