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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaatgacgtggtgtgatctatatagccgacttcagtgggacaagactttgttgttgttatttcataagcatgaggtttgttttttgtttcttgtgtagGTATGGTACAATAATGTTCCTCATACACGTCTTGTTGAAGATAAAGGAGGCCAAAACTGGATTTCTAGAGACAAGGATAAGTTTAAATTCCCGGGAGGTG

Basic information

species Glycine max
transcript GLYMA18G03890.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03890.2 (Glycine max), 3'ss of exon 1
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 1
ctgaatgacgtggtgtg-atctatatagccgacttcagtgggacaagactttgttgttgttatttcataagcatgaggtttgttttttgtttcttgtgtagGTATGGTACAATAATGTTCCTCATACACGTCTTGTTGAAGATAAAGGAGGCCAAAACTGGATTTCTAGAGACAAGGATAAGTTTAAATTCCCGGGAGGTG
  | |   | | || || ||   | | ||  | ||  || ||| || |  |     |||  ||||  |     |    ||||   |||  || | |  ||||||||||  |  |||||||||||||| || ||||||||||| |||||||| || |||||||||||  |||||||| | ||||| || || || |||||||
--gtactcctttgtttgcatgagttttgc--attttggttggataacatgtc----ttgggatttagtttaagtagtatttggaatttacttat-ggatagGTATGGTTTAGCAATGTTCCTCATACTCGGCTTGTTGAAGACAAAGGAGGTCAGAACTGGATTTCACGAGACAAGAACAAGTTCAAGTTTCCTGGAGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactttgttgttgttatttcataagcatgaggtttgttttttgtttcttgtgtagGTATGGTACAATAATGTTCCTCATACACGTCTTGTTGAAGATAAAGGAGGCCAAAACTGGATTTCTAGAGACAAGGATAAGTTTAAATTCCCGGGAGGTG
                                tttgttttttgtttct  CT-rich tract
          ttgttatttcataa  TA-rich tract