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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtattggaattttggtttgtggaattttgtattctcgtgaggttaattgtgtgtatctgaggggaattaaagctgagaagggagttctatgtgcaGGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGATGCTTTGTCCAATTGGGTTAATGATGAAGTAGCAGTTAACCCCTGTAATT

Basic information

species Glycine max
transcript GLYMA18G02850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213601130|gb|DB956466.1|DB956466
EST:     TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAA                         GGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT
genomic: TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAAggtattggaa ... tctatgtgcaGGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT
EST: gi|209711010|gb|BW676407.1|BW676407
EST:     TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAA                         GGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT
genomic: TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAAggtattggaa ... tctatgtgcaGGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT
EST: gi|213600836|gb|DB956228.1|DB956228
EST:     TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAA                         GGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT
genomic: TGTGTTTATTGTTTCAGAACTTTAGTTTGTGCTGCTCTTTGAATGAAGAAggtattggaa ... tctatgtgcaGGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttaattgtgtgtatctgaggggaattaaagctgagaagggagttctatgtgcaGGTAAAGCTCTTTTGAAGTTCAAGCATGGAATAGTAAACGACCCTTTTGATGCTTTGTCCAATTGGGTTAATGATGAAGTAGCAGTTAACCCCTGTAATT
 ggttaat  putative branch site (score: 4)
                        aattaaa  TA-rich tract