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...aaatttattgagaattacaaaattataaataaaatttattaaatatgaaaagagtgccacatatttttgtaatttttaacaattttttttgtttatatagCTTAACATTGTAGAGGGCATGATGCAACATCTATTTGATGAGAATGGCAGGCGTTATCTTGATGCTTTTGCTGGAATAGTTACTATTTCTTGTGGACATT
species | Glycine max |
transcript | GLYMA18G02440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgaaaagagtgccacatatttttgtaatttttaacaattttttttgtttatatagCTTAACATTGTAGAGGGCATGATGCAACATCTATTTGATGAGAATGGCAGGCGTTATCTTGATGCTTTTGCTGGAATAGTTACTATTTCTTGTGGACATT
ttttaac putative branch site (score: 2)
ttttttttgtttat putative PPT
atatttttgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatttattgagaattacaaaattataaataaaatttattaaatatgaaaagagtgccacatatttttgtaatttttaacaattttttttgtttatatagCTTAACATTGTAGAGGGCATGATGCAACATCTATTTGATGAGAATGGCAGGCGTTATCTTGATGCTTTTGCTGGAATAGTTACTATTTCTTGTGGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - gaaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgccaca