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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatctgcatcattccccttttaagattctgttttattatgctttacgttttaaatgttaaccagtatttacaagttgcatgccatgaatgtgaatacagGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATA

Basic information

species Glycine max
transcript GLYMA18G00720.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00720.2 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 3'ss of exon 6
acatctgcatcattccccttttaagattctgttttattatgcttt-acgtt-ttaaatgttaaccagtatttacaagttgcatgccatgaatgtgaata-cagGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATA
    |  | | | |      | || |     |   ||   ||||| | ||| | || || |  | | |  |||    |       ||||  ||    || ||||||||||||| ||| | || |||||||| ||||| || ||||||||||| || || |||||  |||| ||| | ||||| ||| |||| || ||  | ||
---gcaacgttaatgatagatcaatagatcatgccatggagcttttatgttgtcaattgatgcctatttattatttatcattgatcatgcgtgcatttaacagGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTA

upper sequence: GLYMA18G00720.2 (Glycine max), 3'ss of exon 1
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 3'ss of exon 6
acatctgcatcattccccttttaagattctgttttattatgctttacgtt-ttaaatgttaaccagtatttacaagttgcatgccatgaatgtgaat-acagGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATA
|| |   |  | ||      |||    |    | |  | || || |  |  ||   |  |  | | || ||| ||||||       || || |   |   ||| || ||||| || ||| ||||||| |||||||| ||||||||||||||| |||| ||||| ||||| ||| | ||||| ||| | ||||| ||| | ||
ac-tgaactccgttgtagcattagcgctgaaatgttctgtggttgaattaatttgtttctggcaaataatta-aagttgttgctgttggatttacgttgtagGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCCAGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCAGGCTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgttttaaatgttaaccagtatttacaagttgcatgccatgaatgtgaatacagGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATA
          tgttaac  putative branch site (score: 2)
     ttaaatgttaa  TA-rich tract