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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcaactcaattctccaccttattcttttcacttcttcagctcttgttttttcccaaatctactttcaaagtgcctgaattctgcaacagtaatattaacactcctctcttttgttcagGCTTTATTTCCCCAATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCAATTATCTCGTTGGCGCCAGAAACATATCCAAATTCGCTTCTTCAGACGC

Basic information

species Glycine max
transcript GLYMA18G00720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699095|gb|BW664324.1|BW664324
EST:     CTGCCGCTGCAAGCTTG                         GCTTTATTTCCCCAATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCA
genomic: CTGCCGCTGCAAGCTTGgtactctcaa ... ttttgttcagGCTTTATTTCCCCAATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaagtgcctgaattctgcaacagtaatattaacactcctctcttttgttcagGCTTTATTTCCCCAATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCAATTATCTCGTTGGCGCCAGAAACATATCCAAATTCGCTTCTTCAGACGC
                             tattaac  putative branch site (score: 1)
                                   cactcctctcttttgt  CT-rich tract
                     aacagtaatattaa  TA-rich tract