Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attataatatattaatattaatcagttggaactttgggtaatttctttaagtgtgctactttgtgatttagttgttgattaatgattgaatacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAAACTCTCCAACTTATTCCAAAGTCATCCATAGGCTTCCTGTTCCTTATTT

Basic information

species Glycine max
transcript GLYMA18G00590.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00590.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0029g00240.t01 (Vitis vinifera), 3'ss of exon 1
attataatatattaatattaatcagttggaactttgggtaat----ttctttaagtgtgctact--ttgtgatttagttgttgattaatgattgaataca-atacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAAACTCTCCAACTTATTCCAAAGTCATCCATAGGCTTCCTGTTCCTTATTT
       |  | |||     ||  | |    | |  ||| ||     |  |||  ||| ||     || ||    | ||      ||||| || ||| |  || ||||  | |||| || |||||| |||||  | || ||||||||||| ||||||| ||| ||  ||||||| ||||| |||||  |||||||||| ||||||||
-------ttaactaacgcccatgtgcttctccatcaggtcatgctccttcttagctgtcctcacaattttgggccacttcccttctaatggttcaattcttatgcagGATCAGGAAAAGGGAAGCCTGACTACCTTGCTACAGTGGATGTAGATCCAAGCTCACCTTCTTATTCAAAAGTTATCCACCGGCTTCCTGTACCTTATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213615413|gb|DB965664.1|DB965664
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208262554|gb|GE060097.1|GE060097
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213596491|gb|DB962051.1|DB962051
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|193621631|gb|FK571891.1|FK571891
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|209719087|gb|BW674875.1|BW674875
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|298163915|gb|HO013560.1|HO013560
EST:     CATTTCCGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|209712694|gb|BW684624.1|BW684624
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213610719|gb|DB961194.1|DB961194
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|192327467|gb|FK017824.1|FK017824
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|4289585|gb|AI438045.1|AI438045
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208270980|gb|GE067804.1|GE067804
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|16995993|gb|BM085365.1|BM085365
EST:     CTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213601718|gb|DB972426.1|DB972426
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|14990685|gb|BI316358.1|BI316358
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|207729248|gb|GD709104.1|GD709104
EST:     ATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: ATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|9204378|gb|BE330602.1|BE330602
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208210807|gb|GE011798.1|GE011798
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|254325879|gb|GR838760.1|GR838760
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|192301362|gb|FG998382.1|FG998382
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208185110|gb|GD984144.1|GD984144
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCCGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208215201|gb|GE010158.1|GE010158
EST:     CATTTCCGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGT
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGT
EST: gi|254335972|gb|GR841297.1|GR841297
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|16995794|gb|BM085166.1|BM085166
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATTTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208126479|gb|GD924351.1|GD924351
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCCGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|193342304|gb|FK307222.1|FK307222
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|209723717|gb|BW662585.1|BW662585
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|16995858|gb|BM085230.1|BM085230
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|193364890|gb|FK330599.1|FK330599
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208336818|gb|GE136048.1|GE136048
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|207803802|gb|GD772775.1|GD772775
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|298166003|gb|HO008974.1|HO008974
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213611345|gb|DB972746.1|DB972746
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213592648|gb|DB955806.1|DB955806
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|192323156|gb|FK017382.1|FK017382
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|254329343|gb|GR833715.1|GR833715
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208337428|gb|GE133144.1|GE133144
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|209726198|gb|BW659563.1|BW659563
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|6567240|gb|AW234851.1|AW234851
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|254347236|gb|GR853485.1|GR853485
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|18848557|gb|BM567731.1|BM567731
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|254322235|gb|GR837649.1|GR837649
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|208191686|gb|GD991046.1|GD991046
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGAACCGGAAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCC
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGA-CCGGAA-TAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCC
EST: gi|193435325|gb|FK399895.1|FK399895
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|213611956|gb|DB958938.1|DB958938
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|207756407|gb|GD729560.1|GD729560
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|193666780|gb|FK608877.1|FK608877
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|193353910|gb|FK321666.1|FK321666
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
EST: gi|209726336|gb|BW659636.1|BW659636
EST:     CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAG                         GGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA
genomic: CATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGgtactacctc ... tacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaagtgtgctactttgtgatttagttgttgattaatgattgaatacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAAACTCTCCAACTTATTCCAAAGTCATCCATAGGCTTCCTGTTCCTTATTT
                               gattaat  putative branch site (score: 3)
                                attaatgattgaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attataatatattaatattaatcagttggaactttgggtaatttctttaagtgtgctactttgtgatttagttgttgattaatgattgaatacaatacagGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAAACTCTCCAACTTATTCCAAAGTCATCCATAGGCTTCCTGTTCCTTATTT

- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg