Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG

Basic information

species Glycine max
transcript GLYMA17G37730.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttc-gttccaatatttcttttttccattctaaaattcgttttcctcttttccgcat---tcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                                     |  ||  |      |  |||||| |||||       | | |   |  ||| |||       |  ||||  | | ||     ||||||||| ||||| ||| |||||||  ||||||| ||||| || || ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||| 
----------------------------------gtaaagatcccgcattcagcctcttctgttcc----ccccctctccgcgatctgaaaccgtacctgttcttcccggaatgggctgcagATCCGGTTCATCCTGCTGCAGAATCGGCAGGGGAAGACGCGGCTGGCCAAGTACTACGTCCCGCTCGAGGACTCGGAGAAGCACAAGGTCGAGTACGAG-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G052713_T02 (Zea mays), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                      |  |    ||||  |   ||| |   |||| | |||||| | |          ||| |  |||   |  | | ||   |||    |||    ||||||||| ||||| ||| |||||||| ||||||| || || || || ||||| ||||| ||  |||||||||||||||||||||||||||| || |||||||
---------------------gtaacgaactcgcatc-cgatttccccaatactttcttcgattc----------tttcctgttcctcaccttggttcgatctgccacgccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAGG

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: AC195874.2_FGT002 (Zea mays), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                |      | | |  ||| | |   | |          ||||   |||   ||         |   | |   |  | ||| ||| |   ||  |    |||||||||| ||||| ||| |||||||| ||||||| ||||| || || ||||| || ||||| || ||||||||||| || ||||||||||| ||||||||| 
---------------gtaactcgcgcccaatcgattcg--actgtccacgcgctctcacggttagcatccaatcggatctgactaacatttccgtgttcttgggttggggcggcgcagATCCGCTTCATCCTGCTGCAGAACCGGCAGGGGAAGACTCGACTGGCCAAGTATTACGTCCCGCTCGAGGACTCGGAAAAGCACAAGGTTGAATACGAG-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G052713_T03 (Zea mays), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                      |  |    ||||  |   ||| |   |||| | |||||| | |          ||| |  |||   |  | | ||   |||    |||    ||||||||| ||||| ||| |||||||| ||||||| || || || || ||||| ||||| ||  |||||||||||||||||||||||||||| || |||||| 
---------------------gtaacgaactcgcatc-cgatttccccaatactttcttcgattc----------tttcctgttcctcaccttggttcgatctgccacgccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcatt-cgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                             | | || | | ||| |  |   | | | ||  ||||  | ||  | | |  |  || ||   |  |   ||||| | ||   ||   ||||||||||||||  | ||||||||||| || || ||||| ||||| ||||||||||| || |||||||| || |||||||| ||||| |||||||||||| 
----------------------------gtacactgctttatttctcttccactttgtt--ttcctttgttcatgtctgacgctc-aattctgatccacctctctcccaatttgtccagATCCGATTCATATTATTGCAGAACAGACAAGGTAAGACTCGTCTAGCCAAATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAG-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g14240.t01 (Vitis vinifera), 3'ss of exon 2
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                             | | |||    ||||  || ||    ||||  || | |      |   || |        | |||||    |  | |  |  || |||||||||||||||  |  | ||||||||||||||||||||||| || ||||| ||||| |||||||| || || ||||||||||||||||||||||||||| 
----------------------------gtactctct-cgattatgatgattcaatcttgattgcgaggagattgagttgct------gactcgttcat-taatctttgatttggcagATCCGATTCATAATTCTACAGAACAGGCAGGGCAAGACCCGCCTCGCCAAGTACTATGTTCCTCTTGAAGAATCCGAGAAGCACAAGGTCGAATACGAG-

upper sequence: GLYMA17G37730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0023g03340.t01 (Vitis vinifera), 3'ss of exon 1
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattc-gttttcctcttttccgcat----tcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
             | | | |  | | | |||  ||   |  ||       |    | || | |   || ||   |      |  || |||||| | |||    ||| || ||     | |||||||||||||||  ||||||||||||||||||| ||||| ||  | ||||| |||||||||||| ||||||| || ||||| |||||||||||||||||| 
------------gtaaattttcttcttttttttctttcttttt-------ttcctttttggatttgatgttgagtgg----aacctgaaattctgatttttcttttcccacaaattgtggcagATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196591|gb|HO041334.1|HO041334
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|120494113|gb|EH222280.1|EH222280
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298194266|gb|HO040914.1|HO040914
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|151412034|gb|EV281845.1|EV281845
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|16345364|gb|BI970959.1|BI970959
EST:     CGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCNGTCTTGCCAAA
genomic: CGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|12773864|gb|BG238791.1|BG238791
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298170230|gb|HO018854.1|HO018854
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCTATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298167144|gb|HO010583.1|HO010583
EST:     TCAGATCGGAAAAATTCACCTCTCCAGTCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|38193189|gb|CF922395.1|CF922395
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|8283304|gb|BE020865.1|BE020865
EST:     CGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|6666885|gb|AW278344.1|AW278344
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|7795478|gb|AW780875.1|AW780875
EST:     GAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: GAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|15200385|gb|BI424322.1|BI424322
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|17519104|gb|BM188146.1|BM188146
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|193460745|gb|FK427514.1|FK427514
EST:     CAGATACGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CAGAT-CGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|4285580|gb|AI440924.1|AI440924
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|20448913|gb|BQ253037.1|BQ253037
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|17153474|gb|BM143407.1|BM143407
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|192322713|gb|FK014404.1|FK014404
EST:     TCAGATCGGAAAAATTCACCTCTCCAACCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|151412841|gb|EV282653.1|EV282653
EST:     TCAGATCGGAAGAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|10236137|gb|BE804955.1|BE804955
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|209699340|gb|BW664059.1|BW664059
EST:     CCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: CCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|192297663|gb|FG989582.1|FG989582
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|26269345|gb|CA820408.1|CA820408
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298169760|gb|HO021120.1|HO021120
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|298187150|gb|HO034299.1|HO034299
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA
EST: gi|31462386|gb|CD404414.1|CD404414
EST:     TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATG                         ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCTGTGTTGCCAAA
genomic: TCAGATCGGAAAAATTCACCTCTCCAATCCCAATCCCATCGTTGCAAATGgttccttcgt ... gcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG
                   ttctaaa  putative branch site (score: 2)
                           ttcgttttcctctttt  CT-rich tract
     atttctttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttccttcgttcatcattctattccctctttcgctccataattacaataataatctcttcgttccaatatttcttttttccattctaaaattcgttttcctcttttccgcattcgcagATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC